Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs55697724 chr10:885622 T/C 3.57E-6 508 21.7 25.83 14.43 KM Plot
LGG rs55708963 chr10:925712 C/A 5.86E-7 508 21.7 24.38 14.5 KM Plot
LGG rs55823432 chr21:30553969 A/C 0 507 21.18 25.95 3.2 KM Plot
LGG rs55897938 chr14:24414654 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs55935747 chr3:153674323 G/T 0 506 22.1 22.73 0.23 KM Plot
LGG rs55979334 chr9:37934702 T/A 0 503 22.73 23.53 2.47 KM Plot
LGG rs56005021 chr2:74397073 A/G 2.66E-5 502 21.83 25.2 11.57 KM Plot
LGG rs56027583 chr9:133360893 T/C 4.0E-5 500 22.6 20.97 14.98 KM Plot
LGG rs56095702 chr1:204165981 A/G 8.37E-6 499 22.67 21 7.18 KM Plot
LGG rs56118929 chr16:10833450 GT/G 2.48E-5 502 23.53 20.32 8.17 KM Plot
LGG rs56142120 chr9:133360958 G/C 4.0E-5 500 22.6 20.97 14.98 KM Plot
LGG rs56222464 chr10:867535 C/G 3.92E-6 508 21.7 25.83 14.43 KM Plot
LGG rs56367723 chr3:153673562 C/T 0 504 22.47 22.73 0.23 KM Plot
LGG rs56386614 chr18:72051924 C/T 7.47E-5 508 22.6 21.67 6.7 KM Plot
LGG rs56400326 chr18:72051658 C/CTT 2.67E-5 505 22.67 21.6 6.7 KM Plot